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    Shaun Jackman

    Bioinformatics PhD, Computer Engineering BASc

    Professional Background

    Shaun Jackman is an accomplished and dedicated professional with a PhD in bioinformatics, bringing to the table a remarkable academic and career trajectory. With over sixteen years of experience in both the industry and academia, Shaun has honed his skills as an open-source software developer, exemplifying expertise particularly in the fields of bioinformatics and software engineering. His unique combination of skills has made him a notable contributor in the realm of genome sequence assembly and bioinformatics, where he has had a profound impact on the development of novel software tools and algorithms.

    During his career, Shaun has held various prestigious positions, including that of Communications Biologist at 10X Genomics, where he contributed significantly to the advancement of genomics research. He has also served as a Teaching Assistant at the University of British Columbia, providing guidance and sharing his knowledge with aspiring students. Shaun’s commitment to education and mentorship underscores his passion for the field and his dedication to fostering new generations of bioinformaticians.

    One of Shaun’s most remarkable achievements is the development of ABySS 1.0, which was the first software tool capable of assembling a complete human genome from Illumina sequencing technology. His involvement didn’t stop there—Shaun also led the development of ABySS 2.0, which took genomic assembly to new heights by successfully reconstructing a substantially large twenty-gigabase conifer genome, a project that was seven times larger than the human genome. These accomplishments reflect not only Shaun’s technical prowess, but also his innovative spirit and problem-solving capabilities in tackling complex biological questions through computational methods.

    Shaun's extensive background includes work at various esteemed organizations such as BC Cancer Genome Sciences Centre and Boreal Genomics, where he applied his deep-rooted knowledge of computational biology and bioinformatics to contribute to cutting-edge research and solutions in genomics. His engineering experiences at Pathway Connectivity and Vortek highlight his versatility in applying his engineering skills within different contexts, particularly in embedded and real-time control systems, further enriching his diverse skill set.

    Education and Achievements

    Shaun's impressive educational background laid the foundation for his successful career. He obtained his Doctor of Philosophy (PhD) in Bioinformatics from The University of British Columbia, where he conducted groundbreaking research and studied advanced methodologies that have shaped his career path. Complementing this, Shaun pursued studies in bioinformatics through Coursera, further expanding his expertise in this rapidly evolving field.

    Additionally, Shaun holds a Bachelor of Applied Science (BASc) with First Class Honours in Computer Engineering from Simon Fraser University, where he excelled in his studies and developed a strong grounding in computer science principles. He has also taken courses through Udacity, focused on computer science, showcasing his commitment to continuous learning and staying abreast of technological advancements.

    Shaun’s academic accolades, both formal and informal, reflect his pursuit of excellence and passion for research, innovation, and community contribution.

    Achievements

    Shaun Jackman’s career is punctuated by a series of outstanding achievements that highlight his contributions to bioinformatics and software development. The successful development of ABySS 1.0 and ABySS 2.0 stands as a testament to his exceptional technical abilities and innovative thinking. These assemblers have become indispensable tools in the field of genomics, enabling researchers to tackle genomic challenges that were previously deemed insurmountable.

    Furthermore, Shaun’s expertise in programming languages such as C++, Python, and R, as well as his proficiency in assembly language, make him a leading figure in bioinformatics software development. His contributions extend to the open-source community, where he has shared his knowledge and resources to uplift fellow developers and scientists.

    Beyond his technical skills, Shaun is also an enthusiastic traveller and a passionate singer, which enhances his creativity and inspires his problem-solving approach in programming and algorithm development. His love for cooking adds yet another dimension to his multifaceted personality, showcasing his appreciation for diverse experiences and cultures.

    Shaun Jackman embodies the spirit of innovation, collaboration, and excellence in bioinformatics, expertly merging his extensive knowledge and practical experience to drive advancements in genomic research and technology.

    Related Questions

    How did Shaun Jackman develop his expertise in bioinformatics and software development over his distinguished career?
    What inspired Shaun Jackman to create the ABySS software tools for genome assembly?
    In what ways has Shaun's background in computer engineering influenced his approach to bioinformatics?
    What are some of the challenges Shaun Jackman faced while developing high-performance parallel algorithms for genomics?
    How does Shaun Jackman incorporate his interests in travel, music, and cooking into his professional life?
    Shaun Jackman
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    Location

    Vancouver, British Columbia, Canada