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    Cole Trapnell

    Associate Professor at University of Washington, Department of Genome Sciences

    Cole Trapnell is an Associate Professor in the Department of Genome Sciences at the University of Washington. Here are some key details about his background and research:

    Education and Training

    • Ph.D. in Computer Science from the University of Maryland, College Park
    • Postdoctoral training at Harvard University in the Department of Stem Cell and Regenerative Biology

    Research Focus

    Dr. Trapnell's research primarily involves:

    • Studying stem cells and cell differentiation
    • Developing and applying high-throughput transcriptome sequencing methods
    • Creating computational tools for analyzing genomic data, especially single-cell genomics
    • Investigating gene regulation and cell fate decisions

    Notable Achievements

    • Principal developer of several widely-used open-source software tools for analyzing high-throughput sequencing data, including TopHat and Cufflinks
    • Pioneer in methods for analyzing differentiation with single-cell transcriptome sequencing
    • Recipient of the 2018 Overton Prize from the International Society for Computational Biology for outstanding early to mid-career accomplishments

    Current Role

    As an Associate Professor at UW, Dr. Trapnell:

    • Leads a lab focused on finding genes that govern stem cell maintenance and cell differentiation
    • Operates at the interface of genomics and experimental cell biology
    • Develops new technologies for studying gene regulation and cell-cell communication in development and disease

    Dr. Trapnell has made significant contributions to the fields of computational biology and genomics, particularly in developing methods for analyzing large-scale single-cell experiments to understand developmental processes.123

    Highlights

    Jul 12 · alleninstitute.org
    Cole Trapnell - Allen Institute
    Cole Trapnell - Allen Institute

    Related Questions

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    Cole Trapnell
    Cole Trapnell, photo 1
    Cole Trapnell, photo 2
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    Location

    Seattle, Washington, United States